Scaffold Ga0182014_10000309

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10000309
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62006
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (61.02%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F013561	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_1000030931	F013561	N/A	MADEQLLNSFRALIRAAEEGAAIPPVGENDLKCLHEASIDLAKRYCGKDGAISIDLMARACSRDADLPAVWLRHTQLRLLIRQGLLAEWQHGTALDDAVFRVAATLPLSGVHFDPDTFIRQLRKGAAVGNP*
Ga0182014_1000030944	F000072	GAG	MNIDRTIAEIEYLERIYEVPDTRPLSLSDLAAANRRHDDMLAHSPWFRIWQRYGVCCRGEPECGIG*