Scaffold Ga0182014_10000234

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10000234
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70371
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009755	Metagenome / Metatranscriptome	313	Y
F022188	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_1000023410	F022188	AGGAG	MQRLHRYLGSLLVGATLIAPVGIQANDKDRNCPDKGYYDHKDCHNWDDHETRAYQAWEKAQRKTDREFSKLKAKEQSEYWKWRHEHPDNDNDRH*
Ga0182014_1000023450	F009755	N/A	MALPVFAAAISSLHAQATRLTLAATMTNAAANQVKVYNAANGTLLQTLSTDGKGGAAGNARGVKQFNGSLLAAVNNGSNSVAIYTREGDYLAFEKTVTTTSAPVSVDFGNGHMYVAGATTVDSFELRGNEVGWMDGTTGLLGSGGGAPSAGSTAQVGVLDGEHLLVTVKNDPTLAGTVDIVSLLNGGAISGAAPTAVAGPEASLTPFGFSTYPDGTAVITLAHSSQDGLFRDGAFTTEIPSGQAAPCWTTRIGKYVFTVNAASKTVSRLVGTGNNIFVDSQVAATVSTGGGPSDIDAAEGVLGVIDNLGGASPAAHLSLFTYNQFGELSPSGTPISVGASANGVAIIPPLGATAY*