Scaffold Ga0182010_10003030

Overview

Basic Information

• Taxon OID: 3300014490
• Scaffold ID: Ga0182010_10003030
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8255
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001063	Metagenome / Metatranscriptome	789	Y
F039801	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182010_1000303011	F039801	AGGCGG	MSFRKKLLMLFAATVLLCVGVISVSVYSTIRGSFEQANQDRANAVAAQFQSEFQRRGLEV
Ga0182010_100030307	F001063	GGAGG	METMLQGLVIIGGLTFSLAASLLIEELIFGQIVRVAFARRQDVSKHGRQN*