Basic Information | |
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Taxon OID | 3300014489 Open in IMG/M |
Scaffold ID | Ga0182018_10170000 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1235 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001949 | Metagenome / Metatranscriptome | 613 | Y |
F020595 | Metagenome / Metatranscriptome | 223 | N |
Protein ID | Family | RBS | Sequence |
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Ga0182018_101700002 | F020595 | AGGAG | MACPDCGSPAGDLGFATSVETHGLDCGPYETFNEEFIVCRECGERYDVCEWDGTQELREISIPSDRIETAAVRLNLLPTG* |
Ga0182018_101700003 | F001949 | N/A | MRNAAATAADPALLQHDGDPAVSYFNLEFNPQMATSLVHCLNRRYKGAQKFPVTAPDAQGTLIVWARDPQECREHLMNALFDLIFARNRVGAAVDNPPCIFCGGKTQSRGRNSSGTRAWRCMNPDCQRSFVIDRTFRGGINHPTQSKKPAFYQLVFVDGKTIREACDALSISMSAGDNWYQKMFAVRKRIDHKCPCG |
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