Scaffold Ga0182018_10170000

Overview

Basic Information

• Taxon OID: 3300014489
• Scaffold ID: Ga0182018_10170000
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1235
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001949	Metagenome / Metatranscriptome	613	Y
F020595	Metagenome / Metatranscriptome	223	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_101700002	F020595	AGGAG	MACPDCGSPAGDLGFATSVETHGLDCGPYETFNEEFIVCRECGERYDVCEWDGTQELREISIPSDRIETAAVRLNLLPTG*
Ga0182018_101700003	F001949	N/A	MRNAAATAADPALLQHDGDPAVSYFNLEFNPQMATSLVHCLNRRYKGAQKFPVTAPDAQGTLIVWARDPQECREHLMNALFDLIFARNRVGAAVDNPPCIFCGGKTQSRGRNSSGTRAWRCMNPDCQRSFVIDRTFRGGINHPTQSKKPAFYQLVFVDGKTIREACDALSISMSAGDNWYQKMFAVRKRIDHKCPCG