Basic Information | |
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Taxon OID | 3300014489 Open in IMG/M |
Scaffold ID | Ga0182018_10001479 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 26556 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (72.73%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F002101 | Metagenome / Metatranscriptome | 593 | Y |
F003337 | Metagenome / Metatranscriptome | 493 | Y |
F004095 | Metagenome / Metatranscriptome | 453 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0182018_1000147910 | F003337 | GGA | MSVSVLRNLLCWVMVILYPLSLAAADTGSAIVHSNGGVWVNGTEVADSTTVFPGDVLETKPGFVANLDAEGSSVLIQGESIVKFQGNSLTLEHGKVSVGTSTAMNVNVNCLKVEPISNERTQYDVTDVSGKVEVAANKNDVKITLTGALRKASSESGSSDSATVHEGQRATRDESTACGVAPRPGGASTTPLNTKWLEIGGGAGAGVLVLCLLLCKGSGPSNVSPSQP* |
Ga0182018_100014798 | F002101 | AGGAG | MTMPVLSLPLPSPDGSPVKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLISVAGEADSRDKFCTDMRSASPPQRIAFFVGGPEYLAAAPHSDAGPAEADADALHKEMVAALLAQAASDSSHQRWGILEACKRISSVRSVSEARSRAVRETPRPSRWEEAIERYSAPEAINPQPLFTTASAPPLSTAETEREELL* |
Ga0182018_100014799 | F004095 | AGGAG | MSAINGDKARFNRRRRQKISRRQSNEKMLKALAEKHLVAPAAPANLKEKMA* |
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