Scaffold Ga0182018_10001479

Overview

Basic Information

• Taxon OID: 3300014489
• Scaffold ID: Ga0182018_10001479
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26556
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002101	Metagenome / Metatranscriptome	593	Y
F003337	Metagenome / Metatranscriptome	493	Y
F004095	Metagenome / Metatranscriptome	453	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_1000147910	F003337	GGA	MSVSVLRNLLCWVMVILYPLSLAAADTGSAIVHSNGGVWVNGTEVADSTTVFPGDVLETKPGFVANLDAEGSSVLIQGESIVKFQGNSLTLEHGKVSVGTSTAMNVNVNCLKVEPISNERTQYDVTDVSGKVEVAANKNDVKITLTGALRKASSESGSSDSATVHEGQRATRDESTACGVAPRPGGASTTPLNTKWLEIGGGAGAGVLVLCLLLCKGSGPSNVSPSQP*
Ga0182018_100014798	F002101	AGGAG	MTMPVLSLPLPSPDGSPVKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLISVAGEADSRDKFCTDMRSASPPQRIAFFVGGPEYLAAAPHSDAGPAEADADALHKEMVAALLAQAASDSSHQRWGILEACKRISSVRSVSEARSRAVRETPRPSRWEEAIERYSAPEAINPQPLFTTASAPPLSTAETEREELL*
Ga0182018_100014799	F004095	AGGAG	MSAINGDKARFNRRRRQKISRRQSNEKMLKALAEKHLVAPAAPANLKEKMA*