Scaffold Ga0182018_10000678

Overview

Basic Information

• Taxon OID: 3300014489
• Scaffold ID: Ga0182018_10000678
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42690
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001644	Metagenome / Metatranscriptome	658	Y
F010141	Metagenome / Metatranscriptome	307	Y
F010566	Metagenome / Metatranscriptome	302	Y
F031079	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182018_100006781	F010141	AGG	MNPYIRSVIRTSICLAVALAAAVSFGAAADRQQAQAELLDRAAFLCDNCFFGASDYYYCFAADHQVLIGYQRTPVMNWQDKSKNYLAPAHPAWAAWTAPGQTVPISYDGKYIWIAREKPVRQGFWAHLKTFAFWASRGDSKQVRLTRSSMRDIFTGNAQCRAADKAPTH*
Ga0182018_1000067813	F031079	AGG	MMIEGGGAPMSTSGIVGEEIAKQAALASVALQDISGAGPNAGHLLPRAVLAMLGPYSAAKFFAERVLQSEAFNVELVQALYSKMLPLERMVDDVLVAARKRGYFDDPDAAEPLRWLETCNEQVKDCMVALESMLDPQLEDVMAAAMGEHQRGETVPLDSIL*
Ga0182018_1000067814	F010566	GAGG	MTIDLKPEQQRVIDLAVGSGAYQNLGEVLDQAFEIIREQLDLEDWMFEQREAIAAHIEKGFGQAERGELLDGDAAVEMFRQQRAERMKPQG*
Ga0182018_1000067821	F001644	N/A	MAKTFGFSDDELKLLLVAVRQMRRTFAQPRKSDPALEAYASLYDELFEKLHDMTGPLPDAVEDVME*