Scaffold Ga0182000_10010821

Overview

Basic Information

• Taxon OID: 3300014487
• Scaffold ID: Ga0182000_10010821
• Source Dataset Name: Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2221
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Magueyal, Guanajuato
• Coordinates
  • Lat. (^o): 21.195
  • Long. (^o): -100.439

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020517	Metagenome	223	Y
F081092	Metagenome / Metatranscriptome	114	Y
F091480	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182000_100108213	F081092	AGG	VSGYEDFIERLEAALADDEAREDFLDYLEGLTKEGRAEILDEADRREADTEAA*
Ga0182000_100108215	F020517	GGA	VSRDAKHYLVKRPNEIIPKKRSWNEVQAELREKGTAADEAMLFRGIVTEDGTEYRDMYADSRTQVTEHSA*
Ga0182000_100108216	F091480	GGTGG	MRDLHVYVEPVGSGARGERTTFYSRRGDGPYYRWLYAEGPGRWRYSRVHLDRPTLRLLSLAPWEALPAALRSRLGEHYLE*