Scaffold Ga0163163_10007938

Overview

Basic Information

• Taxon OID: 3300014325
• Scaffold ID: Ga0163163_10007938
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9384
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009755	Metagenome / Metatranscriptome	313	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163163_100079388	F009755	AGGAG	MFRRNVLGVIVAVLALAAGSGGIYANGTHGRTLVVTMTNDPDANQVKVYDARSHVLLQTLSAHGRGGVGGNARGIKQNDGILVAVVNNGSNSVALFRRDGDVLKFDRTVSTTSAPVSVDFGNEHLYVAGATTVDSFVLHQNSVVSLDGTTDLTLAGGGAPPAGSTAQVGAISERQLLVTLKTDPDPGTVDVIALDRGRVTGSAPTAVSAPDGSLAPFGFATYPDGTALITLAHSNQDGLFRDASFTSIIAARQTASCWMTRAGKYVFVANTGSRTISRLVGTGNNVFIDGLVAAQIPTGSPADIDADSGVLGVIDHGAGQSHLSVFTYNRFGELAATGTTITVGVPDANGVSILSPRDDDQN*