Scaffold Ga0075359_1003944

Overview

Basic Information

• Taxon OID: 3300014266
• Scaffold ID: Ga0075359_1003944
• Source Dataset Name: Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleB_D1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1680
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: Twitchell Island, San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.107521
  • Long. (^o): -121.649681
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045183	Metagenome / Metatranscriptome	153	N
F060094	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075359_10039441	F045183	N/A	RKETLKRLTNRLMHPALRESEIIKTLSGLPGVRPFLYEFKLGPLFLISAWLFLFHANYTGAAEDWLLYFFGGFTVVGVLSLHKTVMRFLYRIAQFDKPVEGQDRTIMITAETVTLLGFLMAAMLFLNEFQSTGFGM*
Ga0075359_10039442	F060094	AGG	MQRCGLVLCGFPAFMFAAALLLSCTAQQPEGVPVYRSERGFAIGLPAQWLAVNPLELGGKENPLGTHNPQIRGLFTAEGLKALKEKALSGGVELFVNLETSDETFMESINIQVAPGSVVVEDSDVVPACAETEKSLAALYGNPVKMDACKALKIRRIPAFFMEYRVEKLALAHAQYLIQLKADRYVVMTLTCRPKNLPKLRPEFDAIAASFRAT*