NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172381_10103734

Scaffold Ga0172381_10103734


Overview

Basic Information
Taxon OID3300014204 Open in IMG/M
Scaffold IDGa0172381_10103734 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2356
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039448Metagenome / Metatranscriptome163Y
F075591Metagenome / Metatranscriptome118Y
F098516Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0172381_101037342F039448AGGMNVSKAIEIAMAETIRKYAEMGKGVTVRAWQSLASDGSWKENPDRTFPMIDVRCSPPKTDDNESTLAVECSVLMGTKTDDDKDHAFISAMYEAVQGVCDNLFSQFRNATGSTYTADTEIADFLASVIANVTAAGFNFGGFTFGDGLAPADDGGINMIGITMVIHYSRSDF*
Ga0172381_101037343F098516AGGAGGMPGTAVTKATSFGALTDHFSILTIVHGVGTLANILKLVDSSATPRAQSRADALDENEDVAASAFYGNSAGEIEEISSTFALVSDELDLSDLVIGELTAGIVAESIEVKTANGAWPQITIAGYKGLETIVAPTGFLNTFVLPAITVKGVKQAQVLGFTVTTGRLTGSGASFKCTLAEQADGFGEPAAHGVSGGTGEVTADFVDISGAPAWAIAAVLADSAAAAKFMGEVTQVPGETEPQANWHTASGKIEFICPRNSAA*
Ga0172381_101037344F075591AGGMQDLAKLSELAQAEIESLRADGIDLTPAEIVEINALGWAVESPETRRLLARGAPVPVGGVYLWPMSLYAQEWFDRVGCHLLGSKCQTYALAYAMVHGRDEGEPLALDGLKAELVIGLWGARLKCTFGELNVAISQILQQEEESDQPPSETGGMSMGDFSAFMAASTGDDPDFWERRCAAGYTYAVLDCITRQNSAEG
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