Scaffold Ga0181531_10001344

Overview

Basic Information

• Taxon OID: 3300014169
• Scaffold ID: Ga0181531_10001344
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15618
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F009261	Metagenome	320	Y
F016145	Metagenome / Metatranscriptome	249	Y
F047435	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181531_100013445	F005296	AGGAG	MPLWLLWLLPSFEAGFWTALAAGKLRDRGKVRELLLYGRRARTKLPLIDEMLRKTAGTPTRPQAFAARHIASLIGWLVNTRAMELAILIGLKRSWPKGNAISSKVKLCM*
Ga0181531_100013446	F009261	AGGA	LVLTPSNSGNLVAGAGLGLFAWGAFLKSDKIPLLKILLTTRRKERTLGWISRNKGITLLGLETINLGIHGIVSANAVIFALGNTILNIFMLWAYLPIRMMRYEKKRIQSLLKGTA*
Ga0181531_100013447	F047435	AGGA	MTKLTLLAVLGLMYIGVVRLANFLMAVLIILFFGVATWELIRTARQQAKDRFASQLQSRSVTP*
Ga0181531_100013449	F016145	AGGAG	MRLSASRIRSLSIRYALAEAAAFPGIGLERVNRTINRTATAEIRHHRPLIAHEA*