Scaffold Ga0181531

Basic Information
Taxon OID	3300014169 Open in IMG/M
Scaffold ID	Ga0181531_10000902 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014169 Open in IMG/M

Scaffold ID

Ga0181531_10000902 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19342
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

19342

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	47.1149	Long. (^o)	-88.5476	Alt. (m)	Depth (m)	.1 to .2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

47.1149

Long. (^o)

-88.5476

Alt. (m)

Depth (m)

.1 to .2

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048424	Metagenome / Metatranscriptome	148	Y
F059437	Metagenome / Metatranscriptome	134	Y
F082044	Metagenome / Metatranscriptome	113	Y
F102028	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181531_1000090211	F102028	AGGA	MSAGYGNLGKLDEHPPGTPKNPWGKWPKIKPETVAPLRDGRPDLYNYTPTRFVSKAEAEARDWKLFWTGELCVTGHRAARYVSNPSVCTDCQRIERGKLPVYGKGVPELEAARKRNYTQKNTSPAGPPVPSTAEKRFLEKYAELKDFAEAAEALGRTEAEFVAILSWNQVFRDAVNRLEESMGIARTLKVTDEFDWDDDKRKSFLYTYANTGDMKQAMRSVGVTNVQFQREISENEEFRQAYDEAHEMAKSVFDHAASAVAIRGDSKLLGRVAANLFPEKFGESLKMDLNVKGTMTVEQQNAELSTLLSGLARQGVLTARDPERIAGPEVIDADYSVVERESEEQTDRDLAPAAADAVADPNSDLVSGS*
Ga0181531_1000090212	F048424	GGA	MILTPELEEVANSVRVLRDRVLVKILPYVHPTLATPGIEINKGVVIAVGYGRRQRRKVAFRQEISDGPPVLGPGGRVMKFAPSKLSGKTLWFEDGPETGEIIPMQVSPGDVVEFSFRNITLVDFDRLGFPGIGDLAFVWQKAIYSVDPDESLNECLLWQQSAGYDRNGNFMSGSEDWHRA
Ga0181531_1000090214	F059437	GGCGG	MVIGNRYLQGSPILPYANVKAYPNTDIFMDLQFVDHTNTPVVPTSISIEIDDITNSVVLPNCGPVSLVSTGAVGTAGSPFTYPAFAASMYLQVLASAWQMTFPYIGSQLCQVGMQFTAVDSVTGQPFTSTSVVAIIELCALATVSGLTY*
Ga0181531_100009027	F082044	GAG	MSVTLKLTHEDGVRLRQQAAHKIEHKDGVAVEWRFVKRPASDGAITEECQQDEDPRRVDANGRKAKLGTYTLHITAGMNNLVIERKGKVTPYSFKNPAIRNQVRIQHQKLVDSGRKTKDGKPVHEWKNDGAARYVPANTFDGVYVGDGQRAILDEMPT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181531_10000902

Overview

Ecosystem & Geography

Associated Families

Sequences