Scaffold Ga0181531_10000012

Overview

Basic Information

• Taxon OID: 3300014169
• Scaffold ID: Ga0181531_10000012
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 189665
• Total Scaffold Genes: 172
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 117 (68.02%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038324	Metagenome / Metatranscriptome	166	N
F047796	Metagenome / Metatranscriptome	149	N
F053418	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181531_10000012109	F038324	N/A	MLSCLLGLPGFAANEKPLGLVTQAQDAQVADSKVAVGTTVYPGDKVETKVGGALRLRMGATQLYLLGSSSATLAQRSDAVLAVVARGTVGFSSDGTNQFELEVPEGVIRAANSQPAYGQVTIVGPQEIVVSAYRGSLLLDNDGEIHTIPEGKSYRVTMDLDSAAAGPDAASSQDNGNTTPAKRRRRKLAFFLLFGAAAALASYGIWDVLSESSSTPSN*
Ga0181531_10000012113	F053418	GGAGG	MRVLCRSCLIAILIAGLLNIPAFAANEAPLGLVTQAQSAQIGNSKVEIGTTIFPGDVLATDVGGTLRLKFGADQLYLLSASSASLARTATNSAVHAVVNRGTVGFSSNGNDQIELEIPEGILRAAKGEPAYGQVTIVGPREVVISAYRGTLVLEYNEEFRSIPEGKSYRVTMDLEPASPPQAPAGVGGSVPSTKKALNTPTLVWALVAVGAAGGVGYVIWDVLSESSSSPNN*
Ga0181531_1000001220	F047796	GGCGG	MKYQGTLGVHATVSEDTPVFDVFFAPNVDKSACNSRRFRELQELGEFLEALEVQHEVVARTLEELRKGRSASIENIVLSDEVIFDQGLDSTVTLNRRIN*