Scaffold Ga0181534_10008928

Overview

Basic Information

• Taxon OID: 3300014168
• Scaffold ID: Ga0181534_10008928
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5410
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030162	Metagenome / Metatranscriptome	186	Y
F064245	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181534_100089283	F030162	GGAGG	MLRELFPLLTALTVAAIVYVARERRRRRMRIAPPRPDLAMREVSDAPALLQIERAALATDDPRVAFRRAAIQNAVAALYLETIAECGVEQTGELLRAHTEAWRALREYLRLKHDDAATEDWFDHFTSVARPYIREKVRLTREFALHLDEGAERYARI*
Ga0181534_100089286	F030162	GGAGG	MLRELFPLLTALTVAAVVYIARERRRRRMRIAPPRPDLAMRDVSDAPVLLQIERAALATDDPRVAFRRAAIQNAVAALYLEAVAACGVENTGELLRAHTEAWRALRQYLRLKYDDAVPDDWFDHFTSVARPYIREKVRLTREFALHLDEGAERYARIYDELLQELLDEALAAPQKKSFVPPDFSHS*
Ga0181534_100089288	F064245	GGCGG	MEGLREAYSRRGHPRLDELIAAQGLSFPRDPADLIGNFWPEEESMDDILTALHAWRGRELAD*