Scaffold Ga0181528_10043099

Overview

Basic Information

• Taxon OID: 3300014167
• Scaffold ID: Ga0181528_10043099
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2519
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181528_100430991	F014639	AGGAG	MSEITQSTTTPTSIEIGVLNRKWKLILFLFAKRAFESKLEGILRAAAGHEGNSLPPGDHQYHLLSAEADSLCKEFAGRWALDVDLLRARIPGLAKLAGLSVPPTTKSYARLAWIGMIAVPTALFLIGAMAGLVSVAFHLVGGR*
Ga0181528_100430992	F025336	GGAGG	MALLAIIAAAEAMLFSASGAKRNQTRRQQVLMGNSLDSIHDLPLVDTYLKRKTAGAGRVQRFAASKRAEICRRALHSRSFEYLVLHLIRTAILKRRSKYRNIGRRVTICK*
Ga0181528_100430993	F013913	N/A	MRGSFLAGIGLWVLVWALLFKSDEIAELGGVQRWINSDRCIRWIRNHKSTSLIGTEIVNYSHTGLDPLGVTFALGGTLTNLLVIYVLLPILNGAKRGGKVLNL*