Scaffold Ga0181528_10009186

Overview

Basic Information

• Taxon OID: 3300014167
• Scaffold ID: Ga0181528_10009186
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5920
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009261	Metagenome	320	Y
F025900	Metagenome	199	N
F044872	Metagenome	153	N
F050080	Metagenome	145	N
F062380	Metagenome	130	N
F085038	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181528_1000918610	F050080	N/A	MHNLNQQRKCPKEGNQMASSFVSRQRNQQRNTPPVAIKPFVRAAQNFALQTKQNREILDGQGQPMGTEVYTEIRMQGTVLAVRDEGIEDEFGRQYIGLVIQINPDKDRFVQTADPTLHAQILALKQGDLVYVTSEWHRNSSGRGFHARAKTITVLAPASTPGPVAVESIAEALASAA*
Ga0181528_1000918612	F062380	GAGG	MPSDFNDFECNDFEKLLFADPGSTGACKLIIAYHPGFPLALGRIECASGLPIDVRVNVLESTPVLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV*
Ga0181528_1000918613	F044872	N/A	LNSFASMVKGSILVTDAIKAAFSKFEGGIPSDDQVLVAISEVVFTVTLNKEARQVLSFYLIQLYANHLFISDPSSEFGVCMRIARREIDTLLSFSVLDRIAKYVWEHREQFLMLWTVYAENSAAHPESTSDILGATLTESIQLLEAA*
Ga0181528_100091863	F085038	GGAGG	MKLIFGFLLFIAIVAITGGLYLIIRKEDDKKCDLQRLYSLPSQIARRVQSLGDYLFSLFCSKPAANNEHPTAGVTAAA*
Ga0181528_100091865	F009261	AGGAG	MILTPSNTGNVAAGVGVGIFAWGAFLKADKIPWIQKLLTTKRKEATLKWIDKNKGISLLGLETINFGIHGITNPNSVMFALGNTILNIFMLWVFLPFRMASAAKKHTMSVLKGVA*
Ga0181528_100091869	F025900	N/A	MSFCTLDLKLQLQEKCVPVSRTRTPKKNRNNLAPKSKEAQRKIRRWSFVVEVTVGDTTKTFQPPALTIGNLGSARAAAETIRADIASLDQFKDAKVVVKPRAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKLDTAGCPCHEIEDEAARQVEFDRHVTERLGKYVMEEQQAMRRQQMIDAGIDPDQVLNNQLPAEQVPAEFQAAPAVEEAPAEQINTDPFPDGEFGKEAA*