Scaffold Ga0181523_10152662

Overview

Basic Information

• Taxon OID: 3300014165
• Scaffold ID: Ga0181523_10152662
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1358
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005822	Metagenome / Metatranscriptome	389	Y
F037974	Metagenome / Metatranscriptome	167	N
F072644	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181523_101526621	F037974	GAG	MNRATDILRVKQIAIDEDGKVTKRFPRIDAEGQLKNTLLFAMHPEICVLSMQ
Ga0181523_101526622	F072644	GGA	LKHPDFLGFCCSARGSATSLAVKKEKLMSERNQVVVVLIVALLLGAFVDRSTALKIVAGVALLWTLQNQPTVFECIRKLFSLRRGGLSVREYRGGITTVHAS*
Ga0181523_101526623	F005822	GGAG	MKSSEQTMASTGPESTADSKSTQPPAVEGKRARAVRDSQATPPRSAVSRRRRIRHDNSAAAGEERFFLASGSGNGNVPSLGRECGSEAEAIIDAFRERVNFYTVSEFQTRADVGPSGEPILRKDGLKKTNPAS*