Scaffold Ga0181523_10041731

Overview

Basic Information

• Taxon OID: 3300014165
• Scaffold ID: Ga0181523_10041731
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2891
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016600	Metagenome / Metatranscriptome	246	Y
F018090	Metagenome / Metatranscriptome	237	Y
F038327	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181523_100417311	F038327	AGGAG	MRHSRFISSTPLIARLLTGLLFAILAVVVPLNAADSHSWYDVSKEVTLSGTVSSVFHKPAPGMIWGSHLMVETVSGRLDASLGRFGLEGKGALSVTPGQQIELTGVMKTVRDKEVFVVRSVRANGKTFTMRNEHGIEVSPLTRQRAAEKG
Ga0181523_100417312	F018090	N/A	LRSVPLPGHITGSEDGTILTFAEGPVTGSYTVGSDCRGTATITPKGRSEMHFSLVVVDCGKEMLAIETDADTVVSGPMVKGN*
Ga0181523_100417313	F016600	AGGAG	MEETRRLQMQRRLIWVTLFSVAIVVTALYHTRKVHATPVQGCSVASLRGKYAFRRTGVNNVVGGPIAEMGISFYGGDGTRGLIRNTRSTDGVIRPWTDYPAPNGTYTVDPDCTGSFFDADGTHSNNVVVVDGGKRFFVLSDAPGTTVMEEGIRLEEEKD*