Scaffold Ga0181532_10002212

Overview

Basic Information

• Taxon OID: 3300014164
• Scaffold ID: Ga0181532_10002212
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18211
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000269	Metagenome / Metatranscriptome	1410	Y
F000323	Metagenome / Metatranscriptome	1300	Y
F052072	Metagenome / Metatranscriptome	143	Y
F062016	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181532_1000221218	F000323	AGGAG	MKTFWFVLLLSGSFLLAQDSNPGNPSQHKSKTSKGQETVQGCVGRFSGDYILTKQDPAMTYELQATGKIKLHQYLGQRVEVTGSESPSMMTSSDAMAKTGAPSSVTLTITSIKTLEKECPVQQIPQ*
Ga0181532_1000221219	F000269	N/A	MEISSRVGQRSHVLELSLLLLLVALATASEQPAPKPTEVPATVIAHLALPQATGSQMLLQRENEKHYLYVQQAGKQGFMVVDVTKPEKPSLLKRTAESNQSTAGNLQMVSPDVAIAEAPEKTPATLTSNSHPTETVRVLDLSDPRNPKTLETFNKVTSILPDGGHGLIYLTNNEGLWILRYNRPSLLEPAKKKPPCDSESEIMAMPPDCD*
Ga0181532_100022124	F062016	GGAG	MKSFHKVATFTLMMAVLGASAFAQQTAPATAALANLTEGQGSITSNGSVSWDGLSEFVLIPGASLMGASSTTTALYIGFTGGSEADIGNMVLYETPRNGSTVLKVTKVELGGTQSPSIDLTSTAVCPVQPVSVTNPCIVRLDTVKLALSPLDDYYFTIYFTLDTNNEQIKGVGQTGSPGALSGWNLYGDQTRIGVKGALPTNENNDQAPFFLAYVTNE*
Ga0181532_100022125	F052072	GGAG	MKTIFKFATLILMMFAVSVCGFSATKAENLVRGVIGPVASNTSWSGYSTLALVPGAGLIPVTSTTTVFYLGFTAGTKADINNMVLYTTARGSSTITAVTPVKYGGVSNPSIDLASATVCPVVEISTFNPCIVRLDPTTITLSALSDYYLVVYFTASDSNNSAIGLTQPSFAQSSLRGTYESGDESRLSVGGSIPSTLSFANQPYMLMYVMTD*