Scaffold Ga0181532_10000545

Overview

Basic Information

• Taxon OID: 3300014164
• Scaffold ID: Ga0181532_10000545
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38871
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000348	Metagenome / Metatranscriptome	1250	Y
F004490	Metagenome / Metatranscriptome	436	Y
F018974	Metagenome / Metatranscriptome	232	Y
F022484	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181532_1000054512	F004490	GGAG	MECRTKDELEQHLSDIRRLATSPALTSEEKDAVVRAERFAISLLREHDESGHHGKRCPFATRLE*
Ga0181532_1000054515	F018974	AGGAG	MTSQPSSKSRPSTRDWGMKLKTFLTAVMSVLSILVVGLGGLQKDVFWLWIGFVCCLVSGVFVQLFINRIKNEVASGRR*
Ga0181532_1000054529	F022484	N/A	LAEQVDRIAKKRRLSDNRVLVELVEQGLEAQKEKERAFFALAERFRAAADPKEAKQLGDEMGRFIFGE*
Ga0181532_1000054532	F000348	GGA	LKKALIVLGVVVLAPVLVVSLVVLAAGDWRTVGLTEAGDTVSVSSIRVLKNNQRLALVRVEYKDPAELPQGGPFVEMRARVRFNCTSGTAAPTTEWFYSRDHSGRFVVSKKATHDDQFGKNPEGGFGELVSKSVCSQTK*