Scaffold Ga0181538_10002023

Overview

Basic Information

• Taxon OID: 3300014162
• Scaffold ID: Ga0181538_10002023
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21671
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019074	Metagenome / Metatranscriptome	231	Y
F042129	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181538_1000202310	F042129	AGGAGG	MFAHIWRMRSRKKRSKDYETFGRQVTLAALQKIDGCQQAYFIKVFQARKPEYLWVVFWRDHKALEAARTNPVWRDQIRKFEAGKFYKTIPLELVCECLCSFGGTAARVAKKNAGRAA*
Ga0181538_100020236	F019074	GAGG	LSAKASSIVVLLCVVLVAGSLLFSSENQGASKPAASAAKSSALPEVWKSGSTGKEYRVKVEGDHFTAEWVNIPSEAAKQGAYTRTECRRSGTRWIGTTRFLLPFPCPPPNGKLKMCPLILRFEVDFISPDRITGGGESLRGFDCSTCEVKETAWRPFSWTPKRQ*