NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181529_10054385

Scaffold Ga0181529_10054385


Overview

Basic Information
Taxon OID3300014161 Open in IMG/M
Scaffold IDGa0181529_10054385 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2790
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046491Metagenome / Metatranscriptome151Y
F046780Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0181529_100543851F046780N/AMINPKTILAEWVTALQALPNLMKAIGGGASSIQFYSENATVFGQPTQNNVRLAVLGMPPGSIMVVWHGTAPGRLGNALVFVHESALYLRAPETPSVGYEDV
Ga0181529_100543852F046491N/AMSGWPTISANANRIMQNRFGEPMVYQPMQAGAPASAPVPLIAIRCTRERMEAGAVASVEEIEVNPVDLPDAPPQRGDTVTAWGATFTVTTVRQPDPYGMVHLTLTMQP*
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