Scaffold Ga0181517_10033871

Overview

Basic Information

• Taxon OID: 3300014160
• Scaffold ID: Ga0181517_10033871
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3296
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007212	Metagenome / Metatranscriptome	355	Y
F046780	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181517_100338711	F046780	N/A	MINPKTILAEWVTALQALPNLVEALGDASNIQFYSENRVVFGKQTQNNIRLAIINMPPGSIMVAWHSSGPGRLGSALVFVHKFSIYLK
Ga0181517_100338712	F007212	N/A	MSYWSAIDAAANSVMQDAFGEPVVYQPMQGGAANGGPLTITAIRHARVRDESGGASNMEEISVNPADLPNFPQRGDVVTAWGSQFVVMTARQPDPYGLVEITLSLRATPAPPPAS*