Scaffold Ga0181517_10017807

Overview

Basic Information

• Taxon OID: 3300014160
• Scaffold ID: Ga0181517_10017807
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5046
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F005112	Metagenome / Metatranscriptome	411	Y
F020126	Metagenome	225	Y
F039911	Metagenome / Metatranscriptome	162	Y
F093116	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181517_100178071	F093116	N/A	TPGLGKSFNGADFDDSVLALLDPEIVAHWKTLQDYPQVVATPTQAMVIDDGDALFDRHPEVQRYDDQYVIRMIADARHGQMGIGCVVNAIVWFNLLWLNRESIVAQLRAMEPSSKVVEAIRWMELDLPKSQMPMIASRLEEIIDSIKMNGKSVEWASAAITEFRNTCPVAPKFWWQGGFQGEGRIPRHRLGNYNEPIAVATAMDAAREEWIEIFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFWHLYNRTREAKRAEFLKAGKDHRGKRITNEQEAGLSAYLFAEEDVHNRIKASGMYLEIYAELVKLVFDRELTLEPPRNPDGSVKPVADGILGGPHTLDGFLDMAKAAGATHKYVPITWESDRVRADYGHLNLDVVVEDTLVRMAGTTPNAANWLGIVDVPDGQYRLEHGLLATEDTSETTPQPATLALPAVSGFERKLKDATLKQQDRQRIEAELKLFQAHVGQRVTVKPVTYHNPQTCQDEPAAEVFLDGNSEPLCWIAREHVPAVTRELTGILVSNGRYSLTAICTLPN*
Ga0181517_1001780710	F020126	GAGG	MNRLANLVLSVGETLVHESRRLLFGIALAAAKQLLGTPQPAGTRDLAFTRALQKKA
Ga0181517_100178077	F002761	N/A	MVWAGLGKLNELARFVGFKRARPRESALRWINSHKVIALTMTEVVNYSVHGISNPLGVTFALGGTIVNTLMVTFVVPIWCRLTRLESRLS*
Ga0181517_100178078	F039911	AGGAG	MKYTIAALLAVVVAIAGYFGIRHLTRKDLGFTPVKRYTTKLANTLTHTEATAAQEAGVSPAA*
Ga0181517_100178079	F005112	AGGAG	MSLVAKYKLFWAGCIATLCGLAFWKNSKSYPRKSPLWRLGKSTIDTGVVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLLTGQVVARMDRRNRKEVARAA*