Scaffold Ga0181521

Basic Information
Taxon OID	3300014158 Open in IMG/M
Scaffold ID	Ga0181521_10035917 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014158 Open in IMG/M

Scaffold ID

Ga0181521_10035917 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3657
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3657

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	47.1149	Long. (^o)	-88.5476	Alt. (m)	Depth (m)	.6 to .7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

47.1149

Long. (^o)

-88.5476

Alt. (m)

Depth (m)

.6 to .7

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042862	Metagenome	157	N
F053734	Metagenome	140	N
F058622	Metagenome	134	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181521_100359171	F042862	GGA	MGIESNPRVHVWPRDKSGRAIEPDLVDAAERNWTRIRAYARRHQEDSARTANLLEATLVALSRARKSNGRLMRPIRNLDNYIYWAFVRRLNRQLAREPKIETVGSTQDLDSLTGIRTRAVPPSIEQELLVKEVMTFLDEKPREMFSLRKAGYSWRDVAGTLKITANNAQA
Ga0181521_100359172	F053734	AGGAGG	LGNMSQLSSPGLSRKQNRAIDAILKSGAAGGISRLQRSIEKIREFHPNLSGRTILRRTAELKLTSWNLPWTEVDKGYLLDHAREFPVSDLARRFRRTQNDVYLLLWKNGESGKFQDGYTRRDLAGLVHVSRRKVSRWVRLGWLTLYQGRVKDRSLRRFLEAHSDEINAERLDRDVRFWLHSLGFHENSTHSVQWLRDRKQSLKVHVCRRCGRKVHGNAIYRHLRVCSKKPAAVTGKIEVQQLY*
Ga0181521_100359173	F058622	N/A	LECRRRYIEWEAFTLWAHAVEEAEHQAPEWLARVVAGRCPGIESQKGEKLWKCLDTWKHETLFAKPNREGWMRAVSFFAVRELAYARNWAYWAYCEQQWSVRRPASYPSYDDWRSAAEDCPDEVLDSSGLRKERKALINAAARAGKERLERAVGIYLELEAFAYWLRPMVDARLPLSGPVLKEFRHRYPAIEMCSGGTWNQVWSRMRHSHLQEPEAGGWLDAVVYTAELHPRRTKVIDYWLLYWAGHWPRGNPQLCPSFEDWRREAESYRPEGCDLENTSSISG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181521_10035917

Overview

Ecosystem & Geography

Associated Families

Sequences