Scaffold Ga0181518_10016659

Overview

Basic Information

• Taxon OID: 3300014156
• Scaffold ID: Ga0181518_10016659
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5265
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038913	Metagenome / Metatranscriptome	165	Y
F050025	Metagenome	146	Y
F098278	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181518_100166592	F098278	GAG	LPERVRLVAAPGGLRDRELEVLGWTTDDESGEVALLCRLVDGSTGEIPARWTDLPVRVAPERALGGFGSPAAWRLLLARGERLAGQGRADRAGEVRS*
Ga0181518_100166596	F050025	GGAG	MSAADRAASTTSAPPTLAVPARARALAARLAGLFETDQEIVARLNGAHHLLADANDRLWSDPAADPLGVHQQVGRAFWAYQQASEQRRQLAVDVGELSQQLTDTLTAAGYHPQQARSANVHELAAGTWQATEAGKENQR*
Ga0181518_100166597	F038913	GGAGG	MSGLWEIEASVSPAREILVDGSEQLLVRVQIVDLDNADPAARAFIDLRSTSARQLALEILAAADDAD*