Scaffold Ga0181527_1034490

Overview

Basic Information

• Taxon OID: 3300014153
• Scaffold ID: Ga0181527_1034490
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2945
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021908	Metagenome / Metatranscriptome	216	Y
F038953	Metagenome / Metatranscriptome	164	N
F046139	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181527_10344901	F046139	GAG	MPRFQTILRSARFVYSPYTATEMQGFAQVLADSIRARIQSGQNIYDQAAA
Ga0181527_10344904	F021908	N/A	LDGCPACGADWKAIDVSHGPGCPKNLLEEAMDTPNGALVRRCFRLLNAKSIGLTITLADITEEEFRVLELIEAERQEQIKGGHAGAQGS*
Ga0181527_10344905	F038953	N/A	EPSGALYDKLHISHDGYACAVPIVHKSAAVSEVIAQLAIEADEDPE*