Scaffold Ga0181527_1023363

Overview

Basic Information

• Taxon OID: 3300014153
• Scaffold ID: Ga0181527_1023363
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3889
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F007120	Metagenome	357	Y
F015428	Metagenome	254	Y
F016631	Metagenome	245	Y
F071884	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181527_10233631	F071884	N/A	CPRYRSLPGEGILDFNTDCASGQLEPGDLGTAPPPKRGRLCETCCFFAGIPEEQVAEMTLAPAPQDLVLVV*
Ga0181527_10233632	F003859	AGGAG	MDESNVEKHESLECASIPGRAWPGASLYKSLKLGWQWRRLRWAVVAASEAAQGHEANGLSPGSREFQTLFNEVASKVQEYSTESGDPLDTLKARLPALCALERLANPAPTVPRNKAGLTLAALIAAVLGPVGIGALIGLGTGVAHWIAHFFR*
Ga0181527_10233633	F015428	AGGAGG	MTGILELFALVEMGSGIAFLVRWRKRLLASKVNYFHPPHNRKSPLDKLVRAQTGPVITRQDQLGVKVADGLTVLVRRLVMLDAFRQLMHALFLSNSPLRRSLRTKKKVIYG*
Ga0181527_10233635	F002761	N/A	MVWATLGKLNELVHFVGFKKANPRQTVLRWINAHKVVTITMTEAVNYSVHGISSPLGVTFALGGTLINALMVTFIVPIWCRLSNLERR*
Ga0181527_10233636	F007120	GGAGG	MKTLIIVVSAACAVVAYYFGLRYFTGQDLGFTPARKYVRNLAKNLLHTEVTAAREAGTITASTTEQAA*
Ga0181527_10233638	F016631	AGG	MTRLSNLTLSVAETVVHEAGRLLFGIALGKAKELLDTPEPTGTPQLALHRALQKKTVDGALLSGPRSPNEYAKFTLKKGLPTEQRPRTMAVENQPHSVDDFSGTIQEGYGKGQKRLIYSGVGVIKVAGSRQLGKINVHEHDAEKAGFHYDFVAEGVDPHTESFEINIPNSVLKGRYAFRQALEQNRYLAVRMKDESVLVAKPDIHLKPPEFLNTIRQFNRPVSVEWKDDGSLANVAIHNLRAVYRSHRPEGQAYYDKLPAVEDLRNRSPVWLARRLFPGPEQEGTLLRGELHHPDGAARVGGILNALPEKSIRIQQERGPVEFYAWDIAKFKGRDV