Scaffold Ga0181539_1061127

Overview

Basic Information

• Taxon OID: 3300014151
• Scaffold ID: Ga0181539_1061127
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1715
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042700	Metagenome	157	N
F071899	Metagenome	121	N
F104335	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_10611271	F042700	N/A	MDAQKEAYKLLNEHGEQVRHNKHEAWRVNGHLITITKTKTDDRGWLNKLCEIRRCLKMPAEEAFRQARCNGKDRFTDAPAAQHSVSCTGPTAAR*
Ga0181539_10611275	F071899	AGGAG	MQARVKLTPRTIARLIVGKPVTVNLPAGTTSLSLVTEGKFHEFLRAFHAPEEFKSETPRTEVIGLFDLIFGRH*
Ga0181539_10611276	F104335	N/A	VTEDNNAVTFRTFVPAEELVDTVNEALDAIFEIENPDEDEVETSTNGCFAMAQGISAVAPQPPVTINIVDSSAVNVYIEPQE*