Scaffold Ga0181539_1000927

Overview

Basic Information

• Taxon OID: 3300014151
• Scaffold ID: Ga0181539_1000927
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34271
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (72.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017431	Metagenome	240	Y
F019267	Metagenome / Metatranscriptome	230	Y
F022798	Metagenome	212	Y
F023263	Metagenome	210	Y
F040975	Metagenome	160	Y
F041548	Metagenome	159	Y
F048047	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_100092711	F022798	AGGA	MSYTTITQVAGMFPTFTRNGAKGPSDTLIQNYIDDVAGELDAILQRRFQEAYSSLGFTAWQGSFSTDQLNLLEKINRYGACAQLAEVFETSGIAAAARVAKGFEDEFRELCNKLNARDADGKPLAQGGDYDYLFDPLAKVETPRPQLGGVAGADQYPSETSSEDSTSVFKKWDRREF*
Ga0181539_100092712	F019267	GGAGG	MSASATYTTLYTFRLDRRQLVRRIRVDIIGLASGANTIPHGIVAPNNQSVGQTPKDEIVMLTSTVAVHRTQPADATNLYYTVDSGSGTTISVYVTV*
Ga0181539_100092715	F023263	AGGAGG	MLGNQGLTAAKFDTNIRALRGTVMSLPVSNPSTESDFYVGLPSGFNVAPTGVLAQDVVEPGYPLTSELWLDPNSGNPINGTVPPSPFISQGRAWGLIINAPEAEVIAADTTIQAEDDVVIADAYGRVTSIRNVTTGNTAYVVGKAKYPPTAVNQRIRIQVSLRQTKV*
Ga0181539_100092725	F017431	AGAAGG	MSKVKTKSEQEFDRTEILRYLNECGLQPVTPKSILIYLDDCLRPVSLPGVEFHLRYMRDRGWVELGIEKRVGQPEVIRWTRITANGVDEYDRRCAALGEAK*
Ga0181539_100092728	F041548	AGGAGG	MNAQSLQVQALITFVMPLLIQLAKRSQSAGFAWIDQNKPRICMLTSGVTALLTSMGIQFVHESHSLTVSWPDTATLVRGLVTLLVSVVLQFAAQHALYKGFWQHAVPSPSNEGILKVKSQEGSQKLKVESSK*
Ga0181539_10009275	F040975	AGGA	MISGNQTWQSGLSSPQKQPLYVLQIPQFGIVLASFTQSQIQSLTQSGYGAMTWGVGGWGT
Ga0181539_10009278	F048047	GAGG	MSKSPENGIAKAEDFKRALERANIEHVVLPASGLPVLLCRPPVFAALAMGRAGTQLQARVTDAKPEEVKTEDIEAFTQWLTETLTRLFVQPRFAAAPANDEIGLADILIEDLKFIFRWLRGEVFSAVNSEQGTVNREESVHCPLSTVHCTEDLGRFPGGQRAASVPGGSGEAELLPPERPPGAHRNAGLPAGLHRR*