Scaffold Ga0181539_1000229

Overview

Basic Information

• Taxon OID: 3300014151
• Scaffold ID: Ga0181539_1000229
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67614
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032089	Metagenome / Metatranscriptome	181	Y
F060571	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_100022932	F060571	N/A	MITEQAANQVAPPTVETFSFDVSTPGSDIGTLMVQTRQPSYQLAVDKYAIKIDSNPALVVSKQSDVTIKLNAGTHSVKCYATSSNPAESDHVTFGEPNNKDIVITKGQELKLKYTGPYRLLGSGSLEEIQ*
Ga0181539_100022949	F032089	N/A	MVHEHDGHYHRIPDAEVEDWEEILDEIEGEPVLIDSIQGWPPYTHVYRLPEGSVYLVASGLED*