Scaffold Ga0181539

Basic Information
Taxon OID	3300014151 Open in IMG/M
Scaffold ID	Ga0181539_1000019 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014151 Open in IMG/M

Scaffold ID

Ga0181539_1000019 Open in IMG/M

Source Dataset Name

Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	147566
Total Scaffold Genes	159 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	89 (55.97%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

147566

Total Scaffold Genes

159 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

89 (55.97%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	47.1149	Long. (^o)	-88.5476	Alt. (m)	Depth (m)	.6 to .7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

47.1149

Long. (^o)

-88.5476

Alt. (m)

Depth (m)

.6 to .7

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023021	Metagenome / Metatranscriptome	211	Y
F023506	Metagenome / Metatranscriptome	209	Y
F038042	Metagenome	166	Y
F065350	Metagenome	127	Y
F075569	Metagenome	118	Y
F086488	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_1000019115	F038042	N/A	MKTGPKPIGGMLIPNILQVLEEAGCDLRAWTVTLRLRQLLQTPHLRWETVHKYLEQMTVEQMVFRYEDPSGIVTYSKNPIIREKVLF*
Ga0181539_1000019116	F065350	GAG	MKLTQDVLGHQSSFERFCSQFDWYDFKILSSFLTKLDYPLDTTTQSLHSIWQLFSRRGIQISKMSVSRRLRRFTALGLLRKLFNTNPAFYEITKGEEDLVKKIVYFKKTEDLMQL*
Ga0181539_100001917	F075569	N/A	LTSIAGLLVIGLGYWSIVLLGGICSLSIAGLIGRLTKTKQVIRPKDEKLLHLGKALIAKSHLVYLPLVLFFTSLALGWDVYSADPSRTPSTTAGTRPSMLQLVLHSLNFLATPQHATGVLFSLRLTPGLIVITLISGLVPSIALPYFRRFKIIGINSGPFHSTILTAVFGSIIGLNILVSLLGIFYKVLSAGAPTSYHYAIIVLIGFSLHYSAGTYIGRGKAESIILGKLANGRYDRKRVVVLDRTLNPNAQAIELGSLLRPQLED*
Ga0181539_100001919	F023021	N/A	MVKSDPVAIERWLKDRYKLLFLRVNERTDHAFAIVDLPDLPPDLFEHPSDCKLSLSTPRKAESDFIRMTDFDQGTTFFNSHGWEKRLLEITRN*
Ga0181539_100001945	F023506	N/A	MECKAKFDSKYDAFDTSAITNVGQILENFIVCQKIGRRGCGKRVSVIVVDIR*
Ga0181539_10000198	F086488	GGA	MQKMINETQAKQIAVEYVKTKESGSQTEVKSVERQDIWVMETQTKETNGSQYANVTVSGTGEVKDYTKTRFQSGSVSQRITSKLRSIFSRNKQEATTTKQPPLAPIKE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181539_1000019

Overview

Ecosystem & Geography

Associated Families

Sequences