Scaffold Ga0134081_10020375

Overview

Basic Information

• Taxon OID: 3300014150
• Scaffold ID: Ga0134081_10020375
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1861
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001079	Metagenome / Metatranscriptome	785	Y
F021376	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134081_100203751	F021376	AGG	MWVKHLSSLQFLTYVAFFAVVVAAICKFVPGKAAPVRETPYPEDELYAHDRKTAKYFVAGGLFLVL
Ga0134081_100203752	F000280	AGAAGG	MAARDQEPGPGPARPLVGYRDVGEDVRHSRRAQTRAFVILGFLVLIYLGWTLVIYFLEPGLR*
Ga0134081_100203753	F001079	AGAAG	MAATEAPFPSVLPYVSWSSLTIAAIPADAWPLVFGSMQTLKGHVQEYPGCQKLEAFVHAEAEGAVRIHCYTTWDTPDQLEAFLERGYTFERMLVDVAGITAQPTLVMEKVF*