Scaffold Ga0134359_1000059

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134359_1000059

Scaffold Ga0134359_1000059

Overview

Basic Information
Taxon OID	3300014108 Open in IMG/M
Scaffold ID	Ga0134359_1000059 Open in IMG/M
Source Dataset Name	Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_024
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The George Washington University (GWU)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19093
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (79.17%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Source Dataset Sampling Location
Location Name	USA: Maryland
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F103434	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134359_10000596	F103434	GGTGG	MVGYRPRRGRFLENGPHAVEVTLAVVKEGRTGRRYERGETVYIDRVLVQPSAGNALKATENRDIRGDLTDETTLKVMGTGRKWPGGPHSWVKVIKGPASLEGKTFQQAGEPLTYDASPMTRHWAVRCDTLGTGAK*

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