Scaffold Ga0119868_1155144

Overview

Basic Information

• Taxon OID: 3300014059
• Scaffold ID: Ga0119868_1155144
• Source Dataset Name: Activated sludge microbial communities from Shanghai, China - membrane bioreactor - Membrane foulants
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Tongji University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 645
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Activated Sludge Microbial Communities From Shanghai, China

Source Dataset Sampling Location

• Location Name: China: Quyang, Shanghai
• Coordinates
  • Lat. (^o): 31.3
  • Long. (^o): 121.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060093	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119868_11551442	F060093	N/A	YVKTGTALLFNGEAGADVAFSMEGISTANGRVSAQKDLGASPRPYTFYWSCEVQFQATPTQGLGLELYVAGAPDADATQIDGDIGDADAALGDVDMRRNLKFIGYVTSENAAASEKCVASGVFEHHMRYLSIVGYNASGATTNATDSNFRFDLTPIYYQGQ*