NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120384_1003529

Scaffold Ga0120384_1003529


Overview

Basic Information
Taxon OID3300014057 Open in IMG/M
Scaffold IDGa0120384_1003529 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1208
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Missouri
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10878
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (23.81%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)41.314168Long. (o)-105.584589Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057035Metagenome / Metatranscriptome136Y
F064301Metagenome / Metatranscriptome128Y
F075545Metagenome / Metatranscriptome118Y
F079361Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0120384_100352910F075545GAGMIQLVVNVNLLREIDERKLINAYARYMYNDEKDINDDVKIKENLEQLLDWDKNGDNGLAFYCSKFEKLKRKDWEFLINFIKDNYYEIQTIAYKPVKERKLNSIKVVKSEIELKKQHNIERFTAKDYKVSGRGKKAKPCVYEGREYKSRQECMYKEGLTKYQIWKYLKDTNQI*
Ga0120384_10035292F057035N/AMTEKEFLEKRIPIWLEGEDLHVSTPSNMDKNDMHAFLSKKYGYNWLFCIRGYYWPGSHVQLYLGEYETPNCTLLVTQYLFQYFPDIKYIGFGCHMGKPGEIWKPRIIVARNMECLKDDIRSI*
Ga0120384_10035294F064301GGAGMAKTKGTSRGIVIPTKVSPIWQIGILFPDGKKISKPKCTLNEIFNTYFIGLDKYLDKGLTAEELLNKYKNTFTSKGIKVQINYIDSYGHLWKGKVAYPMENKFIEYLNKRLNNE*
Ga0120384_10035296F079361N/AMIYFTIAKNECGYLIDSISKDYSTLKLKFPNETIYYSNEPIVSIYVIKDQLKSVN*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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