Scaffold Ga0120125_1182522

Overview

Basic Information

• Taxon OID: 3300014056
• Scaffold ID: Ga0120125_1182522
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A20_5cm_0M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 518
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024606	Metagenome / Metatranscriptome	205	Y
F052957	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120125_11825221	F024606	AGCAGG	MDNPMADIGWQPLPAGLWTAPAVFAEVGHLLLQAFTDGGVPTWGIYKTTGEQGAWNIVVKGTADT
Ga0120125_11825222	F052957	AGG	MARDSETFRERAARAVAKAARRRAADDGDRYTRMADAVIAEFAKPTDAMIDAAYEAVRFDEAWAINSRRDFSKAVRAMVQTARQKQGRNG*