Scaffold Ga0119952_1042219

Overview

Basic Information

• Taxon OID: 3300014050
• Scaffold ID: Ga0119952_1042219
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1295
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030667	Metagenome / Metatranscriptome	184	Y
F102506	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119952_10422191	F030667	N/A	SKDSNKLKDSESKGILMKEIRVPMRQYQDDGDNLAGFGLVEPKDAPQPKIRKSDPKTRGRRAEHEWTPMDVAAEFSFRVGRKYPLLPGTVSVKQLSGALAKFRKQYDTNALIELELLKLFMADERNFQNIGDEAPMLYKMFLASFGKKMNQARENLGLSKINAPLDTTVKMGTLQASDGRTFQNSLSGRAQLARYEKRLKENANG*
Ga0119952_10422192	F102506	AGG	MQMAKKVVKTFSANLNKNLEKGGAWMAIISITTDGMDGTDVLNTSAWSNASAGKRWVKSQVQALTPRKSVKMIAGEGKDLKEKPTSFVGVVTFKS*