Scaffold Ga0119952_1033193

Overview

Basic Information

• Taxon OID: 3300014050
• Scaffold ID: Ga0119952_1033193
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1551
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010398	Metagenome	304	Y
F040618	Metagenome	161	N
F043399	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119952_10331931	F043399	N/A	MLLDDYPIVIWTIMKKNNNYILLDSCGIEVFRRKENRKKEIYQYCEDNGIDYQEEF*
Ga0119952_10331932	F010398	AGGAG	MEISIQGITKVNYELVIDEDVFNDACGECGLDPANYKKFTKDEWDILNPHLVQAVVDNESEIDYTEIHVESSVFADTLTIDDSDNLTTVYYDKNRKTDSVEIQ*
Ga0119952_10331933	F040618	N/A	MENTTTVRMSMTVNVKDVSDKSSCIGFVGQGTWFDGKSFIVTQYKANPTCWYFFVYDIFILTEENYFEGVGSFGNEIWHLNPDNGEMCGKTYLYSSMTDRLYVPYGISQPTKEKSPSFLFVIE*