Basic Information | |
---|---|
Taxon OID | 3300014050 Open in IMG/M |
Scaffold ID | Ga0119952_1033193 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1551 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010398 | Metagenome | 304 | Y |
F040618 | Metagenome | 161 | N |
F043399 | Metagenome | 156 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0119952_10331931 | F043399 | N/A | MLLDDYPIVIWTIMKKNNNYILLDSCGIEVFRRKENRKKEIYQYCEDNGIDYQEEF* |
Ga0119952_10331932 | F010398 | AGGAG | MEISIQGITKVNYELVIDEDVFNDACGECGLDPANYKKFTKDEWDILNPHLVQAVVDNESEIDYTEIHVESSVFADTLTIDDSDNLTTVYYDKNRKTDSVEIQ* |
Ga0119952_10331933 | F040618 | N/A | MENTTTVRMSMTVNVKDVSDKSSCIGFVGQGTWFDGKSFIVTQYKANPTCWYFFVYDIFILTEENYFEGVGSFGNEIWHLNPDNGEMCGKTYLYSSMTDRLYVPYGISQPTKEKSPSFLFVIE* |
⦗Top⦘ |