NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116816_1025626

Scaffold Ga0116816_1025626


Overview

Basic Information
Taxon OID3300014030 Open in IMG/M
Scaffold IDGa0116816_1025626 Open in IMG/M
Source Dataset NameMarine hypoxic microbial communities from the Gulf of Mexico, USA - 11m_Station1_GOM_Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)691
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location
Location NameUSA: Gulf of Mexico
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005940Metagenome / Metatranscriptome386N

Sequences

Protein IDFamilyRBSSequence
Ga0116816_10256261F005940N/ADITQSPEMLSFAIRGFQLVNDLVVDMPINISDQIERPFRKSLLVRGQGDLVYQALRNKEGKNVQLEIFRPDTLLRGIIENVSSPIEEISPRGSVTMYCLVRFRGSKVIQTSSSGVGLGIELLGVGRLG*
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