Scaffold Ga0117792_1004886

Overview

Basic Information

• Taxon OID: 3300013941
• Scaffold ID: Ga0117792_1004886
• Source Dataset Name: Epidermal mucus viral and microbial communities from European eel in Spain - water from Alfacada pond (Ebro delta)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Valencia
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1753
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Fish → Skin → Epidermal Mucus → Unclassified → Epidermal Mucus → Epidermal Mucus Viral And Microbial Communities From European Eel In Spain

Source Dataset Sampling Location

• Location Name: Spain: Alfacada pond
• Coordinates
  • Lat. (^o): 40.647955
  • Long. (^o): -0.738702

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031456	Metagenome / Metatranscriptome	182	Y
F051709	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117792_10048861	F051709	N/A	MIPNKERLGIEIALRPHQTAVEIIQSELRKTEDSINRKWMHLDDYSNSWSWTIWKNWKDAMRGELSYREYLLIVLEAYKK*
Ga0117792_10048863	F031456	N/A	MAQIGSFPATGSAVFNLDFLPEYFLVGNSGVPTQFLDNFSVVTSGVQLMSITSAIRLTALAKYDSGAQLADPNPPGTAISTTTSYLRLATGRINKATTITGNNPSAGIEPAFAASTNISSVARRAVEQSINPSANATFDNFEALFFDPTNVLRAQITFANGYSDEYGNAEMRALYSRYHISDSFGGLEGLTCISADSGAGLI