Scaffold Ga0181297_103268

Overview

Basic Information

• Taxon OID: 3300013883
• Scaffold ID: Ga0181297_103268
• Source Dataset Name: laboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 15 gl 40C L2 15gl 40C L2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: UNIVERSIDADE DE SAO PAULO
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2278
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Laboratory Microcosms → Microbial Communities From Methanogenic Microcosms From Oil Petroleum Samples

Source Dataset Sampling Location

• Location Name: Newcastle Upon Tyne, United Kingdom
• Coordinates
  • Lat. (^o): 54.97825278
  • Long. (^o): -1.61778056

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066219	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181297_1032681	F066219	GGAGG	MKKMLVIVLVIAVTSLSFANLVEFFDSIPPALKFGTGAVIGIYGLSWAYPWFFDPIVIVGDTEFGAFCFGPFIVISPYLWNEASEDSRNIVLNHEYVHYIQHAIYGPILSLSYPILAAYSTLKTGNQWDANLWELQAIELSDSSK