Scaffold Ga0120132_1009018

Overview

Basic Information

• Taxon OID: 3300013832
• Scaffold ID: Ga0120132_1009018
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A3_5cm_0M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1627
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014639	Metagenome	261	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120132_10090182	F025336	GGAGG	MLFALIAAAEAMLFSASGAKRNQVRRQQILMGNSLDSVRALPHVDDYFKRKTIGATRVQVFVASQLAKACRQVVHTRSFEYVLLHVIRTAVLKRRSKLLNIQRRITL*
Ga0120132_10090183	F014639	AGGAG	MSEITQSTKTSASTETGFLNRKWTAIRFFFHTRAFESRLEGILRAAAGHEGNSLPAGDHRYHLLSTEADSLCTEFASRWGLDIDLLKARIAGLAKLKRLSAPQQSMNYARIAFLSLFVIPVLCLLVGAVAGLVSVGFHLAGGR*