NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119898_1044030

Scaffold Ga0119898_1044030


Overview

Basic Information
Taxon OID3300013800 Open in IMG/M
Scaffold IDGa0119898_1044030 Open in IMG/M
Source Dataset NameWastewater microbial communities from municipal sewage treatment plant in Nanjing, China - ZZ_EW_meta
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNanjing University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)569
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Municipal Sewage Treatment Plants In Nanjing, China

Source Dataset Sampling Location
Location NameChina: Nanjing
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011267Metagenome / Metatranscriptome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0119898_10440301F011267N/AFAPEETGATPTSTSGSTDTVTVAARSIPVGCAQFNVQRPFDKGTSIYASWITHGYVEWPTVTLVNDDVAVGDLLRADHIGRPVKAATTDFYSSSNVYSYLQVGKVIEVEKFATNFDDGLLSDMQLPSDPGALKEVFELTKPGTYNGKLGIRGNLDVAYVTGAVRVSLTL*
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