NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119898_1001594

Scaffold Ga0119898_1001594


Overview

Basic Information
Taxon OID3300013800 Open in IMG/M
Scaffold IDGa0119898_1001594 Open in IMG/M
Source Dataset NameWastewater microbial communities from municipal sewage treatment plant in Nanjing, China - ZZ_EW_meta
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNanjing University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4116
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Municipal Sewage Treatment Plants In Nanjing, China

Source Dataset Sampling Location
Location NameChina: Nanjing
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060093Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0119898_10015945F060093GAGGMANEAYIRKGTSKLVNGEAGADVALSMEGVASAAGRVSAQIDWGAAPRPAIYEWSCEVQWQATPTQGGMLELYVAGAPDGDSTQIDGDVGTTDAALGDVDMRRNLRYIGCVVSENAAASEICVASGTFEFTQRYMSIVGYNGGGATINATDSNFRFNIVPVYWQGQ*

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