Scaffold Ga0120158_10141191

Overview

Basic Information

• Taxon OID: 3300013772
• Scaffold ID: Ga0120158_10141191
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1352
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055564	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120158_101411912	F055564	AGGAG	MRKQAIWNAVHEVGIHTRAVEDLIESALVELSELQSKLVQVSNVATVSYATLQESFEGVSETINDLVKVRGTMAQCHEVFVETKEKIPGIRMTTWGDGDPCCGKIAHTDLRVVA*