NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120158_10007827

Scaffold Ga0120158_10007827


Overview

Basic Information
Taxon OID3300013772 Open in IMG/M
Scaffold IDGa0120158_10007827 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A10_80_0.25M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10409
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000805Metagenome / Metatranscriptome883Y
F021376Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0120158_1000782715F000805AGGAGMPSGDTPTKAEAYYKYLQAHQETMHQPATWHVRWLDLAWLWGFVIVLALIALAWVWQYRSTRQRAGIYDVDSFGGYTTELAGPATFFFLLLTLGLTVFAVVLVVGHIVWGQKF*
Ga0120158_1000782718F021376N/AVYLQHLSSLQFLTYVAFFAVVIGAISKFVPGRAPPVRETPYSPQELGAHDRKVAKYFLAAGLFLV

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