NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120123_1178064

Scaffold Ga0120123_1178064


Overview

Basic Information
Taxon OID3300013770 Open in IMG/M
Scaffold IDGa0120123_1178064 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A15_5cm_18M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)511
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).05
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010636Metagenome / Metatranscriptome301Y
F012905Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0120123_11780641F010636AGGAGMKDLSRLLLAPTLAAALLLACTPTNAAHRGGGSAYDGTWSVAIYTLRGDCGSVRVAARIIGGRVYSADQSY
Ga0120123_11780642F012905N/ALPLRVDQNTTLVDVKYERTHSTYWYVIDKPDQFDPQETARQVQIGVCTNADNSSTMKKEGFSYEYHYRTKDGLALTDFKITTCD*

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