Scaffold Ga0120123_1021268

Overview

Basic Information

• Taxon OID: 3300013770
• Scaffold ID: Ga0120123_1021268
• Source Dataset Name: Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1309
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Canada: Axel Heiberg Island, Nunavut
• Coordinates
  • Depth (m): .05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008444	Metagenome	333	Y
F010880	Metagenome	298	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120123_10212681	F010880	GAG	MSYALKKGTTSKILLVYALDATDMRSGKTGLSSRTPDASAAYIREGEAQVQRIPLVEGKLGEHRAGSFVEVDSKLLPGVYQFGVSDEMLAAGAETVTLMLKFHGAIIEPIFIHLVAYDPQDADRLGMAALGPEGRRAALRGAFPRLTEKELGDALWKSKGLAT*
Ga0120123_10212682	F008444	AGGAGG	MPVQHNYTMKAGTKSKLLLVYATSSESTSGKTGLAKNLSAASAAYIREGDSTARRVPIVQGRVGEWGSGALAEVDPELLPGLYQFGAPAEMLAEGSARAVLLIRFPDTVIKPVEINLVAYDPQDAERIGVWSLAGHKRHEFLRQALPRFTEMELALGEQAEKELAAKIGTKKES*