Scaffold Ga0119887_1055808

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119887_1055808

Scaffold Ga0119887_1055808

Overview

Basic Information
Taxon OID	3300013769 Open in IMG/M
Scaffold ID	Ga0119887_1055808 Open in IMG/M
Source Dataset Name	Sewage treatment plant microbial communities from Vermont, USA - Sand_B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Norwich University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1133
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Sewage Treatment Plant → Sewage Treatment Plant Microbial Communities From Vermont, Usa

Source Dataset Sampling Location
Location Name	USA: Vermont
Coordinates	Lat. (^o)	43.727094	Long. (^o)	-72.425964	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028447	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119887_10558082	F028447	GGA	MTMVAGEGFEPSRSDRKERVDRFWTPDNPDGSGWADVDWVSAVRGSRYHYQHGLEYDEALEHLPPFYKVVTRLESDILIPHENSYYIPREHLGDFLAEIALAGGIESVWHVEPCADPPAESRVRHRE*

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